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RING domains act as both substrate and enzyme in a catalytic arrangement to drive self-anchored ubiquitination

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  • Leo Kiss

    (MRC Laboratory of Molecular Biology)

  • Dean Clift

    (MRC Laboratory of Molecular Biology)

  • Nadine Renner

    (MRC Laboratory of Molecular Biology)

  • David Neuhaus

    (MRC Laboratory of Molecular Biology)

  • Leo C. James

    (MRC Laboratory of Molecular Biology)

Abstract

Attachment of ubiquitin (Ub) to proteins is one of the most abundant and versatile of all posttranslational modifications and affects outcomes in essentially all physiological processes. RING E3 ligases target E2 Ub-conjugating enzymes to the substrate, resulting in its ubiquitination. However, the mechanism by which a ubiquitin chain is formed on the substrate remains elusive. Here we demonstrate how substrate binding can induce a specific RING topology that enables self-ubiquitination. By analyzing a catalytically trapped structure showing the initiation of TRIM21 RING-anchored ubiquitin chain elongation, and in combination with a kinetic study, we illuminate the chemical mechanism of ubiquitin conjugation. Moreover, biochemical and cellular experiments show that the topology found in the structure can be induced by substrate binding. Our results provide insights into ubiquitin chain formation on a structural, biochemical and cellular level with broad implications for targeted protein degradation.

Suggested Citation

  • Leo Kiss & Dean Clift & Nadine Renner & David Neuhaus & Leo C. James, 2021. "RING domains act as both substrate and enzyme in a catalytic arrangement to drive self-anchored ubiquitination," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-21443-6
    DOI: 10.1038/s41467-021-21443-6
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    Cited by:

    1. Andrej Paluda & Adam J. Middleton & Claudia Rossig & Peter D. Mace & Catherine L. Day, 2022. "Ubiquitin and a charged loop regulate the ubiquitin E3 ligase activity of Ark2C," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    2. Frank Herkules & Corey H. Yu & Alexander B. Taylor & Vi Dougherty & Susan T. Weintraub & Dmitri N. Ivanov, 2022. "Structural and functional asymmetry of RING trimerization controls priming and extension events in TRIM5α autoubiquitylation," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    3. Leo Kiss & Tyler Rhinesmith & Jakub Luptak & Claire F. Dickson & Jonas Weidenhausen & Shannon Smyly & Ji-Chun Yang & Sarah L. Maslen & Irmgard Sinning & David Neuhaus & Dean Clift & Leo C. James, 2023. "Trim-Away ubiquitinates and degrades lysine-less and N-terminally acetylated substrates," Nature Communications, Nature, vol. 14(1), pages 1-17, December.

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