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Forecasting influenza activity using machine-learned mobility map

Author

Listed:
  • Srinivasan Venkatramanan

    (University of Virginia)

  • Adam Sadilek

    (Google Inc.)

  • Arindam Fadikar

    (Argonne National Laboratory)

  • Christopher L. Barrett

    (University of Virginia
    University of Virginia)

  • Matthew Biggerstaff

    (Centers for Disease Control and Prevention)

  • Jiangzhuo Chen

    (University of Virginia)

  • Xerxes Dotiwalla

    (Google Inc.)

  • Paul Eastham

    (Google Inc.)

  • Bryant Gipson

    (Google Inc.)

  • Dave Higdon

    (Virginia Tech)

  • Onur Kucuktunc

    (Google Inc.)

  • Allison Lieber

    (Google Inc.)

  • Bryan L. Lewis

    (University of Virginia)

  • Zane Reynolds

    (Torc Robotics)

  • Anil K. Vullikanti

    (University of Virginia
    University of Virginia)

  • Lijing Wang

    (University of Virginia
    University of Virginia)

  • Madhav Marathe

    (University of Virginia
    University of Virginia)

Abstract

Human mobility is a primary driver of infectious disease spread. However, existing data is limited in availability, coverage, granularity, and timeliness. Data-driven forecasts of disease dynamics are crucial for decision-making by health officials and private citizens alike. In this work, we focus on a machine-learned anonymized mobility map (hereon referred to as AMM) aggregated over hundreds of millions of smartphones and evaluate its utility in forecasting epidemics. We factor AMM into a metapopulation model to retrospectively forecast influenza in the USA and Australia. We show that the AMM model performs on-par with those based on commuter surveys, which are sparsely available and expensive. We also compare it with gravity and radiation based models of mobility, and find that the radiation model’s performance is quite similar to AMM and commuter flows. Additionally, we demonstrate our model’s ability to predict disease spread even across state boundaries. Our work contributes towards developing timely infectious disease forecasting at a global scale using human mobility datasets expanding their applications in the area of infectious disease epidemiology.

Suggested Citation

  • Srinivasan Venkatramanan & Adam Sadilek & Arindam Fadikar & Christopher L. Barrett & Matthew Biggerstaff & Jiangzhuo Chen & Xerxes Dotiwalla & Paul Eastham & Bryant Gipson & Dave Higdon & Onur Kucuktu, 2021. "Forecasting influenza activity using machine-learned mobility map," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-21018-5
    DOI: 10.1038/s41467-021-21018-5
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    Cited by:

    1. Bi, Xuan & Shen, Xiaotong, 2023. "Distribution-invariant differential privacy," Journal of Econometrics, Elsevier, vol. 235(2), pages 444-453.
    2. Masahiko Haraguchi & Akihiko Nishino & Akira Kodaka & Maura Allaire & Upmanu Lall & Liao Kuei-Hsien & Kaya Onda & Kota Tsubouchi & Naohiko Kohtake, 2022. "Human mobility data and analysis for urban resilience: A systematic review," Environment and Planning B, , vol. 49(5), pages 1507-1535, June.

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