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Structural basis of liprin-α-promoted LAR-RPTP clustering for modulation of phosphatase activity

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  • Xingqiao Xie

    (Southern University of Science and Technology
    Southern University of Science and Technology)

  • Ling Luo

    (Southern University of Science and Technology)

  • Mingfu Liang

    (Southern University of Science and Technology)

  • Wenchao Zhang

    (Southern University of Science and Technology)

  • Ting Zhang

    (Southern University of Science and Technology
    Southern University of Science and Technology)

  • Cong Yu

    (Southern University of Science and Technology
    Guangdong Provincial Key Laboratory of Cell Microenvironment and Disease Research, and Shenzhen Key Laboratory of Cell Microenvironment)

  • Zhiyi Wei

    (Southern University of Science and Technology
    Southern University of Science and Technology)

Abstract

Leukocyte common antigen-related receptor protein tyrosine phosphatases (LAR-RPTPs) are cell adhesion molecules involved in mediating neuronal development. The binding of LAR-RPTPs to extracellular ligands induces local clustering of LAR-RPTPs to regulate axon growth and synaptogenesis. LAR-RPTPs interact with synaptic liprin-α proteins via the two cytoplasmic phosphatase domains, D1 and D2. Here we solve the crystal structure of LAR_D1D2 in complex with the SAM repeats of liprin-α3, uncovering a conserved two-site binding mode. Cellular analysis shows that liprin-αs robustly promote clustering of LAR in cells by both the liprin-α/LAR interaction and the oligomerization of liprin-α. Structural analysis reveals a unique homophilic interaction of LAR via the catalytically active D1 domains. Disruption of the D1/D1 interaction diminishes the liprin-α-promoted LAR clustering and increases tyrosine dephosphorylation, demonstrating that the phosphatase activity of LAR is negatively regulated by forming clusters. Additionally, we find that the binding of LAR to liprin-α allosterically regulates the liprin-α/liprin-β interaction.

Suggested Citation

  • Xingqiao Xie & Ling Luo & Mingfu Liang & Wenchao Zhang & Ting Zhang & Cong Yu & Zhiyi Wei, 2020. "Structural basis of liprin-α-promoted LAR-RPTP clustering for modulation of phosphatase activity," Nature Communications, Nature, vol. 11(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:11:y:2020:i:1:d:10.1038_s41467-019-13949-x
    DOI: 10.1038/s41467-019-13949-x
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    Cited by:

    1. Chikako Nakajima & Masato Sawada & Erika Umeda & Yuma Takagi & Norihiko Nakashima & Kazuya Kuboyama & Naoko Kaneko & Satoaki Yamamoto & Haruno Nakamura & Naoki Shimada & Koichiro Nakamura & Kumiko Mat, 2024. "Identification of the growth cone as a probe and driver of neuronal migration in the injured brain," Nature Communications, Nature, vol. 15(1), pages 1-19, December.

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