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RNA is a critical element for the sizing and the composition of phase-separated RNA–protein condensates

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  • Marina Garcia-Jove Navarro

    (PSL University, Sorbonne Université, CNRS)

  • Shunnichi Kashida

    (PSL University, Sorbonne Université, CNRS)

  • Racha Chouaib

    (Sorbonne Université, CNRS, Institut de Biologie Paris-Seine (IBPS), Laboratoire de Biologie du Développement
    Lebanese International University (LIU)
    Lebanese University)

  • Sylvie Souquere

    (CNRS UMR-9196, Institut Gustave Roussy)

  • Gérard Pierron

    (CNRS UMR-9196, Institut Gustave Roussy)

  • Dominique Weil

    (Sorbonne Université, CNRS, Institut de Biologie Paris-Seine (IBPS), Laboratoire de Biologie du Développement)

  • Zoher Gueroui

    (PSL University, Sorbonne Université, CNRS)

Abstract

Liquid–liquid phase separation is thought to be a key organizing principle in eukaryotic cells to generate highly concentrated dynamic assemblies, such as the RNP granules. Numerous in vitro approaches have validated this model, yet a missing aspect is to take into consideration the complex molecular mixture and promiscuous interactions found in vivo. Here we report the versatile scaffold ArtiG to generate concentration-dependent RNA–protein condensates within living cells, as a bottom-up approach to study the impact of co-segregated endogenous components on phase separation. We demonstrate that intracellular RNA seeds the nucleation of the condensates, as it provides molecular cues to locally coordinate the formation of endogenous high-order RNP assemblies. Interestingly, the co-segregation of intracellular components ultimately impacts the size of the phase-separated condensates. Thus, RNA arises as an architectural element that can influence the composition and the morphological outcome of the condensate phases in an intracellular context.

Suggested Citation

  • Marina Garcia-Jove Navarro & Shunnichi Kashida & Racha Chouaib & Sylvie Souquere & Gérard Pierron & Dominique Weil & Zoher Gueroui, 2019. "RNA is a critical element for the sizing and the composition of phase-separated RNA–protein condensates," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:10:y:2019:i:1:d:10.1038_s41467-019-11241-6
    DOI: 10.1038/s41467-019-11241-6
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    Cited by:

    1. Xueguang Zhang & Gelin Huang & Ting Jiang & Lanlan Meng & Tongtong Li & Guohui Zhang & Nan Wu & Xinyi Chen & Bingwang Zhao & Nana Li & Sixian Wu & Junceng Guo & Rui Zheng & Zhiliang Ji & Zhigang Xu & , 2024. "CEP112 coordinates translational regulation of essential fertility genes during spermiogenesis through phase separation in humans and mice," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    2. Federica Raguseo & Yiran Wang & Jessica Li & Marija Petrić Howe & Rubika Balendra & Anouk Huyghebaert & Devkee M. Vadukul & Diana A. Tanase & Thomas E. Maher & Layla Malouf & Roger Rubio-Sánchez & Fra, 2023. "The ALS/FTD-related C9orf72 hexanucleotide repeat expansion forms RNA condensates through multimolecular G-quadruplexes," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    3. Karl E. Bauer & Niklas Bargenda & Rico Schieweck & Christin Illig & Inmaculada Segura & Max Harner & Michael A. Kiebler, 2022. "RNA supply drives physiological granule assembly in neurons," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    4. Lennart Enders & Marton Siklos & Jan Borggräfe & Stefan Gaussmann & Anna Koren & Monika Malik & Tatjana Tomek & Michael Schuster & Jiří Reiniš & Elisa Hahn & Andrea Rukavina & Andreas Reicher & Tamara, 2023. "Pharmacological perturbation of the phase-separating protein SMNDC1," Nature Communications, Nature, vol. 14(1), pages 1-19, December.

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