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A gene expression map of shoot domains reveals regulatory mechanisms

Author

Listed:
  • Caihuan Tian

    (Chinese Academy of Sciences)

  • Ying Wang

    (University of Chinese Academy of Sciences)

  • Haopeng Yu

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences
    Sichuan University)

  • Jun He

    (Chinese Academy of Sciences
    Fujian Agricultural and Forestry University)

  • Jin Wang

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences
    Sun Yat-sen University)

  • Bihai Shi

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences
    INRA)

  • Qingwei Du

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Nicholas J. Provart

    (University of Toronto)

  • Elliot M. Meyerowitz

    (California Institute of Technology)

  • Yuling Jiao

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

Abstract

Gene regulatory networks control development via domain-specific gene expression. In seed plants, self-renewing stem cells located in the shoot apical meristem (SAM) produce leaves from the SAM peripheral zone. After initiation, leaves develop polarity patterns to form a planar shape. Here we compare translating RNAs among SAM and leaf domains. Using translating ribosome affinity purification and RNA sequencing to quantify gene expression in target domains, we generate a domain-specific translatome map covering representative vegetative stage SAM and leaf domains. We discuss the predicted cellular functions of these domains and provide evidence that dome seemingly unrelated domains, utilize common regulatory modules. Experimental follow up shows that the RABBIT EARS and HANABA TARANU transcription factors have roles in axillary meristem initiation. This dataset provides a community resource for further study of shoot development and response to internal and environmental signals.

Suggested Citation

  • Caihuan Tian & Ying Wang & Haopeng Yu & Jun He & Jin Wang & Bihai Shi & Qingwei Du & Nicholas J. Provart & Elliot M. Meyerowitz & Yuling Jiao, 2019. "A gene expression map of shoot domains reveals regulatory mechanisms," Nature Communications, Nature, vol. 10(1), pages 1-12, December.
    • Handle: RePEc:nat:natcom:v:10:y:2019:i:1:d:10.1038_s41467-018-08083-z
    DOI: 10.1038/s41467-018-08083-z
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    Cited by:

    1. Jian Zeng & Xin’Ai Zhao & Zhe Liang & Inés Hidalgo & Michael Gebert & Pengfei Fan & Christian Wenzl & Sebastian G. Gornik & Jan U. Lohmann, 2023. "Nitric oxide controls shoot meristem activity via regulation of DNA methylation," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    2. Manuel Neumann & Xiaocai Xu & Cezary Smaczniak & Julia Schumacher & Wenhao Yan & Nils Blüthgen & Thomas Greb & Henrik Jönsson & Jan Traas & Kerstin Kaufmann & Jose M. Muino, 2022. "A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    3. Juan Alonso-Serra & Ibrahim Cheddadi & Annamaria Kiss & Guillaume Cerutti & Marianne Lang & Sana Dieudonné & Claire Lionnet & Christophe Godin & Olivier Hamant, 2024. "Water fluxes pattern growth and identity in shoot meristems," Nature Communications, Nature, vol. 15(1), pages 1-14, December.

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