DUC-Curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment
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DOI: 10.1016/j.physa.2016.03.061
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- Ole Madsen & Mark Scally & Christophe J. Douady & Diana J. Kao & Ronald W. DeBry & Ronald Adkins & Heather M. Amrine & Michael J. Stanhope & Wilfried W. de Jong & Mark S. Springer, 2001. "Parallel adaptive radiations in two major clades of placental mammals," Nature, Nature, vol. 409(6820), pages 610-614, February.
- Pal, Mayukha & Satish, B. & Srinivas, K. & Rao, P. Madhusudana & Manimaran, P., 2015. "Multifractal detrended cross-correlation analysis of coding and non-coding DNA sequences through chaos-game representation," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 436(C), pages 596-603.
- Hou, Wenbing & Pan, Qiuhui & He, Mingfeng, 2014. "A novel representation of DNA sequence based on CMI coding," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 409(C), pages 87-96.
- William J. Murphy & Eduardo Eizirik & Warren E. Johnson & Ya Ping Zhang & Oliver A. Ryder & Stephen J. O'Brien, 2001. "Molecular phylogenetics and the origins of placental mammals," Nature, Nature, vol. 409(6820), pages 614-618, February.
- Liao, Bo & Xiang, Qilin & Cai, Lijun & Cao, Zhi, 2013. "A new graphical coding of DNA sequence and its similarity calculation," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(19), pages 4663-4667.
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Cited by:
- Qian, Kun & Luan, Yihui, 2018. "Phylogenetic analysis of DNA sequences based on fractional Fourier transform," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 509(C), pages 795-808.
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Keywords
Graphical representation; DNA sequence; DUC-Curve; Sequence alignment; Sequence comparison;All these keywords.
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