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Fractal landscape analysis of DNA walks

Author

Listed:
  • Peng, C.-K.
  • Buldyrev, S.V.
  • Goldberger, A.L.
  • Havlin, S.
  • Sciortino, F.
  • Simons, M.
  • Stanley, H.E.

Abstract

By mapping nucleotide sequences onto a “DNA walk”, we uncovered remarkably long-range power law correlations [Nature 356 (1992) 168] that simply a new scale invariant property of DNA. We found such long-range correlations in intron-containing genes and in non-transcribed regulatory DNA sequences, but not in cDNA sequences or intron-less genes. In this paper, we present more explicit evidences to support our findings.

Suggested Citation

  • Peng, C.-K. & Buldyrev, S.V. & Goldberger, A.L. & Havlin, S. & Sciortino, F. & Simons, M. & Stanley, H.E., 1992. "Fractal landscape analysis of DNA walks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 191(1), pages 25-29.
    • Handle: RePEc:eee:phsmap:v:191:y:1992:i:1:p:25-29
    DOI: 10.1016/0378-4371(92)90500-P
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    Cited by:

    1. Jin, Xin & Nie, Rencan & Zhou, Dongming & Yao, Shaowen & Chen, Yanyan & Yu, Jiefu & Wang, Quan, 2016. "A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 461(C), pages 325-338.
    2. Pal, Mayukha & Kiran, V. Satya & Rao, P. Madhusudana & Manimaran, P., 2016. "Multifractal detrended cross-correlation analysis of genome sequences using chaos-game representation," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 456(C), pages 288-293.
    3. Pavlos, G.P. & Karakatsanis, L.P. & Iliopoulos, A.C. & Pavlos, E.G. & Xenakis, M.N. & Clark, Peter & Duke, Jamie & Monos, D.S., 2015. "Measuring complexity, nonextensivity and chaos in the DNA sequence of the Major Histocompatibility Complex," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 438(C), pages 188-209.
    4. Arthur Matsuo Yamashita Rios de Sousa & Hideki Takayasu & Misako Takayasu, 2020. "Segmentation of time series in up- and down-trends using the epsilon-tau procedure with application to USD/JPY foreign exchange market data," PLOS ONE, Public Library of Science, vol. 15(9), pages 1-21, September.

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