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Motor unit number estimation via sequential Monte Carlo

Author

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  • Taylor, Simon A.C.
  • Sherlock, Chris
  • Ridall, Gareth
  • Fearnhead, Paul

Abstract

A change in the number of motor units that operate a particular muscle is an important indicator for the progress of a neuromuscular disease and the efficacy of a therapy. Inference for realistic statistical models of the typical data produced when testing muscle function is difficult, and estimating the number of motor units is an ongoing statistical challenge. We consider a set of models for the data, each with a different number of working motor units, and present a novel method for Bayesian inference based on sequential Monte Carlo. This provides estimates of the marginal likelihood and, hence, a posterior probability for each model. Implementing this approach in practice requires a sequential Monte Carlo method that has excellent computational and Monte Carlo properties. We achieve this by benefiting from the model’s conditional independence structure, where, given knowledge of which motor units fired as a result of a particular stimulus, parameters that specify the size of each unit’s response are independent of the parameters defining the probability that a unit will respond at all. The scalability of our methodology relies on the natural conjugacy structure that we create for the former and an enforced, approximate, conjugate structure for the latter. A simulation study demonstrates the accuracy of our method, and inferences are consistent across two different datasets arising from the same rat tibial muscle.

Suggested Citation

  • Taylor, Simon A.C. & Sherlock, Chris & Ridall, Gareth & Fearnhead, Paul, 2020. "Motor unit number estimation via sequential Monte Carlo," Computational Statistics & Data Analysis, Elsevier, vol. 144(C).
  • Handle: RePEc:eee:csdana:v:144:y:2020:i:c:s0167947319302002
    DOI: 10.1016/j.csda.2019.106845
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    References listed on IDEAS

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    1. Drovandi, Christopher C. & Pettitt, Anthony N. & Henderson, Robert D. & McCombe, Pamela A., 2014. "Marginal reversible jump Markov chain Monte Carlo with application to motor unit number estimation," Computational Statistics & Data Analysis, Elsevier, vol. 72(C), pages 128-146.
    2. P. Gareth Ridall & Anthony N. Pettitt & Robert D. Henderson & Pamela A. McCombe, 2006. "Motor Unit Number Estimation—A Bayesian Approach," Biometrics, The International Biometric Society, vol. 62(4), pages 1235-1250, December.
    3. P. G. Ridall & A. N. Pettitt & N. Friel & P. A. McCombe & R. D. Henderson, 2007. "Motor unit number estimation using reversible jump Markov chain Monte Carlo methods," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 56(3), pages 235-269, May.
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    Cited by:

    1. Hensher, David A., 2021. "The case for negotiated contracts under the transition to a green bus fleet," Transportation Research Part A: Policy and Practice, Elsevier, vol. 154(C), pages 255-269.

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