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Flexible link functions in nonparametric binary regression with Gaussian process priors

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  • Dan Li
  • Xia Wang
  • Lizhen Lin
  • Dipak K. Dey

Abstract

type="main" xml:lang="en"> In many scientific fields, it is a common practice to collect a sequence of 0-1 binary responses from a subject across time, space, or a collection of covariates. Researchers are interested in finding out how the expected binary outcome is related to covariates, and aim at better prediction in the future 0-1 outcomes. Gaussian processes have been widely used to model nonlinear systems; in particular to model the latent structure in a binary regression model allowing nonlinear functional relationship between covariates and the expectation of binary outcomes. A critical issue in modeling binary response data is the appropriate choice of link functions. Commonly adopted link functions such as probit or logit links have fixed skewness and lack the flexibility to allow the data to determine the degree of the skewness. To address this limitation, we propose a flexible binary regression model which combines a generalized extreme value link function with a Gaussian process prior on the latent structure. Bayesian computation is employed in model estimation. Posterior consistency of the resulting posterior distribution is demonstrated. The flexibility and gains of the proposed model are illustrated through detailed simulation studies and two real data examples. Empirical results show that the proposed model outperforms a set of alternative models, which only have either a Gaussian process prior on the latent regression function or a Dirichlet prior on the link function.

Suggested Citation

  • Dan Li & Xia Wang & Lizhen Lin & Dipak K. Dey, 2016. "Flexible link functions in nonparametric binary regression with Gaussian process priors," Biometrics, The International Biometric Society, vol. 72(3), pages 707-719, September.
  • Handle: RePEc:bla:biomet:v:72:y:2016:i:3:p:707-719
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    Cited by:

    1. Jianxuan Liu & Yanyuan Ma & Lan Wang, 2018. "An alternative robust estimator of average treatment effect in causal inference," Biometrics, The International Biometric Society, vol. 74(3), pages 910-923, September.
    2. Xiaoyue Zhao & Lin Zhang & Dipankar Bandyopadhyay, 2021. "A Shared Spatial Model for Multivariate Extreme-Valued Binary Data with Non-Random Missingness," Sankhya B: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 83(2), pages 374-396, November.
    3. Difang Huang & Jiti Gao & Tatsushi Oka, 2022. "Semiparametric Single-Index Estimation for Average Treatment Effects," Papers 2206.08503, arXiv.org, revised Apr 2024.
    4. Weiji Su & Xia Wang & Rhonda D. Szczesniak, 2021. "Flexible link functions in a joint hierarchical Gaussian process model," Biometrics, The International Biometric Society, vol. 77(2), pages 754-764, June.

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