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Inferring Spatial Phylogenetic Variation Along Nucleotide Sequences: A Multiple Changepoint Model

Author

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  • Suchard M.A.
  • Weiss R.E.
  • Dorman K.S.
  • Sinsheimer J.S.

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  • Suchard M.A. & Weiss R.E. & Dorman K.S. & Sinsheimer J.S., 2003. "Inferring Spatial Phylogenetic Variation Along Nucleotide Sequences: A Multiple Changepoint Model," Journal of the American Statistical Association, American Statistical Association, vol. 98, pages 427-437, January.
    • Handle: RePEc:bes:jnlasa:v:98:y:2003:p:427-437
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    Cited by:

    1. Leonardo Oliveira Martins & Hirohisa Kishino, 2010. "Distribution of distances between topologies and its effect on detection of phylogenetic recombination," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 62(1), pages 145-159, February.
    2. Husmeier Dirk & Mantzaris Alexander V., 2008. "Addressing the Shortcomings of Three Recent Bayesian Methods for Detecting Interspecific Recombination in DNA Sequence Alignments," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 7(1), pages 1-41, November.
    3. Chi Peter B. & Chattopadhyay Sujay & Lemey Philippe & Sokurenko Evgeni V. & Minin Vladimir N., 2015. "Synonymous and nonsynonymous distances help untangle convergent evolution and recombination," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 14(4), pages 375-389, August.
    4. Wolfgang P. Lehrach & Dirk Husmeier, 2009. "Segmenting bacterial and viral DNA sequence alignments with a trans‐dimensional phylogenetic factorial hidden Markov model," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 58(3), pages 307-327, July.
    5. Yu Chuan Tai & Mark N. Kvale & John S. Witte, 2010. "Segmentation and Estimation for SNP Microarrays: A Bayesian Multiple Change-Point Approach," Biometrics, The International Biometric Society, vol. 66(3), pages 675-683, September.

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