IDEAS home Printed from https://ideas.repec.org/a/gam/jstats/v6y2023i1p11-191d1037928.html
   My bibliography  Save this article

Informative g -Priors for Mixed Models

Author

Listed:
  • Yu-Fang Chien

    (Department of Statistics and Actuarial Science, Northern Illinois University, DeKalb, IL 60115, USA)

  • Haiming Zhou

    (Department of Statistics and Actuarial Science, Northern Illinois University, DeKalb, IL 60115, USA
    Current Affiliation: Daiichi Sankyo, Inc., Basking Ridge, NJ 07920, USA.)

  • Timothy Hanson

    (Structural Heart & Aortic, Medtronic, Minneapolis, MN 55432, USA)

  • Theodore Lystig

    (BridgeBio, Palo Alto, CA 94304, USA)

Abstract

Zellner’s objective g -prior has been widely used in linear regression models due to its simple interpretation and computational tractability in evaluating marginal likelihoods. However, the g -prior further allows portioning the prior variability explained by the linear predictor versus that of pure noise. In this paper, we propose a novel yet remarkably simple g -prior specification when a subject matter expert has information on the marginal distribution of the response y i . The approach is extended for use in mixed models with some surprising but intuitive results. Simulation studies are conducted to compare the model fitting under the proposed g -prior with that under other existing priors.

Suggested Citation

  • Yu-Fang Chien & Haiming Zhou & Timothy Hanson & Theodore Lystig, 2023. "Informative g -Priors for Mixed Models," Stats, MDPI, vol. 6(1), pages 1-23, January.
  • Handle: RePEc:gam:jstats:v:6:y:2023:i:1:p:11-191:d:1037928
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/2571-905X/6/1/11/pdf
    Download Restriction: no

    File URL: https://www.mdpi.com/2571-905X/6/1/11/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Chuanhai Liu & Ryan Martin & Nick Syring, 2017. "Efficient simulation from a gamma distribution with small shape parameter," Computational Statistics, Springer, vol. 32(4), pages 1767-1775, December.
    2. Ibrahim J.G. & Chen M-H. & Sinha D., 2003. "On Optimality Properties of the Power Prior," Journal of the American Statistical Association, American Statistical Association, vol. 98, pages 204-213, January.
    3. Hosack, Geoffrey R. & Hayes, Keith R. & Barry, Simon C., 2017. "Prior elicitation for Bayesian generalised linear models with application to risk control option assessment," Reliability Engineering and System Safety, Elsevier, vol. 167(C), pages 351-361.
    4. Liang, Feng & Paulo, Rui & Molina, German & Clyde, Merlise A. & Berger, Jim O., 2008. "Mixtures of g Priors for Bayesian Variable Selection," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 410-423, March.
    5. Brian P. Hobbs & Bradley P. Carlin & Sumithra J. Mandrekar & Daniel J. Sargent, 2011. "Hierarchical Commensurate and Power Prior Models for Adaptive Incorporation of Historical Information in Clinical Trials," Biometrics, The International Biometric Society, vol. 67(3), pages 1047-1056, September.
    6. Bates, Douglas & Mächler, Martin & Bolker, Ben & Walker, Steve, 2015. "Fitting Linear Mixed-Effects Models Using lme4," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 67(i01).
    7. Demirhan, Haydar & Kalaylioglu, Zeynep, 2015. "Joint prior distributions for variance parameters in Bayesian analysis of normal hierarchical models," Journal of Multivariate Analysis, Elsevier, vol. 135(C), pages 163-174.
    8. Lin, Pi-Erh, 1972. "Some characterizations of the multivariate t distribution," Journal of Multivariate Analysis, Elsevier, vol. 2(3), pages 339-344, September.
    9. Jonah Gabry & Daniel Simpson & Aki Vehtari & Michael Betancourt & Andrew Gelman, 2019. "Visualization in Bayesian workflow," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 182(2), pages 389-402, February.
    10. Yingbo Li & Merlise A. Clyde, 2018. "Mixtures of g-Priors in Generalized Linear Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 113(524), pages 1828-1845, October.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Mark F. J. Steel, 2020. "Model Averaging and Its Use in Economics," Journal of Economic Literature, American Economic Association, vol. 58(3), pages 644-719, September.
    2. Stavros Nikolakopoulos & Ingeborg van der Tweel & Kit C. B. Roes, 2018. "Dynamic borrowing through empirical power priors that control type I error," Biometrics, The International Biometric Society, vol. 74(3), pages 874-880, September.
    3. Yimei Li & Ying Yuan, 2020. "PA‐CRM: A continuous reassessment method for pediatric phase I oncology trials with concurrent adult trials," Biometrics, The International Biometric Society, vol. 76(4), pages 1364-1373, December.
    4. Chenghao Chu & Bingming Yi, 2021. "Dynamic historical data borrowing using weighted average," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 70(5), pages 1259-1280, November.
    5. Lindeløv, Jonas Kristoffer, 2020. "mcp: An R Package for Regression With Multiple Change Points," OSF Preprints fzqxv, Center for Open Science.
    6. Md. Tuhin Sheikh & Ming-Hui Chen & Jonathan A. Gelfond & Joseph G. Ibrahim, 2022. "A Power Prior Approach for Leveraging External Longitudinal and Competing Risks Survival Data Within the Joint Modeling Framework," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 14(2), pages 318-336, July.
    7. Thomas A. Murray & Brian P. Hobbs & Theodore C. Lystig & Bradley P. Carlin, 2014. "Semiparametric Bayesian commensurate survival model for post-market medical device surveillance with non-exchangeable historical data," Biometrics, The International Biometric Society, vol. 70(1), pages 185-191, March.
    8. Kirsner, Daniel & Sansó, Bruno, 2020. "Multi-scale shotgun stochastic search for large spatial datasets," Computational Statistics & Data Analysis, Elsevier, vol. 146(C).
    9. Schwoerer, Tobias & Schmidt, Jennifer I. & Holen, Davin, 2020. "Predicting the Food-Energy Nexus of Wild Food Systems: Informing Energy Transitions for Isolated Indigenous Communities," Ecological Economics, Elsevier, vol. 176(C).
    10. Arnab Kumar Maity & Sanjib Basu & Santu Ghosh, 2021. "Bayesian criterion‐based variable selection," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 70(4), pages 835-857, August.
    11. Hans, Christopher M. & Peruggia, Mario & Wang, Junyan, 2023. "Empirical Bayes Model Averaging with Influential Observations: Tuning Zellner’s g Prior for Predictive Robustness," Econometrics and Statistics, Elsevier, vol. 27(C), pages 102-119.
    12. JANSSENS, Jochen & DE CORTE, Annelies & SÖRENSEN, Kenneth, 2016. "Water distribution network design optimisation with respect to reliability," Working Papers 2016007, University of Antwerp, Faculty of Business and Economics.
    13. Raymond Hernandez & Elizabeth A. Pyatak & Cheryl L. P. Vigen & Haomiao Jin & Stefan Schneider & Donna Spruijt-Metz & Shawn C. Roll, 2021. "Understanding Worker Well-Being Relative to High-Workload and Recovery Activities across a Whole Day: Pilot Testing an Ecological Momentary Assessment Technique," IJERPH, MDPI, vol. 18(19), pages 1-17, October.
    14. Elisabeth Beckmann & Lukas Olbrich & Joseph Sakshaug, 2024. "Multivariate assessment of interviewer-related errors in a cross-national economic survey (Lukas Olbrich, Elisabeth Beckmann, Joseph W. Sakshaug)," Working Papers 253, Oesterreichische Nationalbank (Austrian Central Bank).
    15. Valentina Krenz & Arjen Alink & Tobias Sommer & Benno Roozendaal & Lars Schwabe, 2023. "Time-dependent memory transformation in hippocampus and neocortex is semantic in nature," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    16. Morán-Ordóñez, Alejandra & Ameztegui, Aitor & De Cáceres, Miquel & de-Miguel, Sergio & Lefèvre, François & Brotons, Lluís & Coll, Lluís, 2020. "Future trade-offs and synergies among ecosystem services in Mediterranean forests under global change scenarios," Ecosystem Services, Elsevier, vol. 45(C).
    17. Damian M. Herz & Manuel Bange & Gabriel Gonzalez-Escamilla & Miriam Auer & Keyoumars Ashkan & Petra Fischer & Huiling Tan & Rafal Bogacz & Muthuraman Muthuraman & Sergiu Groppa & Peter Brown, 2022. "Dynamic control of decision and movement speed in the human basal ganglia," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    18. Heinz Schmidli & Sandro Gsteiger & Satrajit Roychoudhury & Anthony O'Hagan & David Spiegelhalter & Beat Neuenschwander, 2014. "Robust meta-analytic-predictive priors in clinical trials with historical control information," Biometrics, The International Biometric Society, vol. 70(4), pages 1023-1032, December.
    19. Dongyan Liu & Chongran Zhou & John K. Keesing & Oscar Serrano & Axel Werner & Yin Fang & Yingjun Chen & Pere Masque & Janine Kinloch & Aleksey Sadekov & Yan Du, 2022. "Wildfires enhance phytoplankton production in tropical oceans," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    20. Zhaogeng Yang & Yanhui Li & Peijin Hu & Jun Ma & Yi Song, 2020. "Prevalence of Anemia and its Associated Factors among Chinese 9-, 12-, and 14-Year-Old Children: Results from 2014 Chinese National Survey on Students Constitution and Health," IJERPH, MDPI, vol. 17(5), pages 1-10, February.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jstats:v:6:y:2023:i:1:p:11-191:d:1037928. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.