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Structure of outer membrane protein G in lipid bilayers

Author

Listed:
  • Joren S. Retel

    (Leibniz-Institut für Molekulare Pharmakologie)

  • Andrew J. Nieuwkoop

    (Leibniz-Institut für Molekulare Pharmakologie)

  • Matthias Hiller

    (Leibniz-Institut für Molekulare Pharmakologie)

  • Victoria A. Higman

    (Leibniz-Institut für Molekulare Pharmakologie)

  • Emeline Barbet-Massin

    (Université de Lyon)

  • Jan Stanek

    (Université de Lyon)

  • Loren B. Andreas

    (Université de Lyon)

  • W. Trent Franks

    (Leibniz-Institut für Molekulare Pharmakologie)

  • Barth-Jan Rossum

    (Leibniz-Institut für Molekulare Pharmakologie)

  • Kutti R. Vinothkumar

    (Max-Planck-Institut für Biophysik)

  • Lieselotte Handel

    (Leibniz-Institut für Molekulare Pharmakologie)

  • Gregorio Giuseppe Palma

    (Leibniz-Institut für Molekulare Pharmakologie)

  • Benjamin Bardiaux

    (Leibniz-Institut für Molekulare Pharmakologie
    Institut Pasteur)

  • Guido Pintacuda

    (Université de Lyon)

  • Lyndon Emsley

    (Université de Lyon
    Ecole Polytechnique Fédérale de Lausanne)

  • Werner Kühlbrandt

    (Max-Planck-Institut für Biophysik)

  • Hartmut Oschkinat

    (Leibniz-Institut für Molekulare Pharmakologie)

Abstract

β-barrel proteins mediate nutrient uptake in bacteria and serve vital functions in cell signaling and adhesion. For the 14-strand outer membrane protein G of Escherichia coli, opening and closing is pH-dependent. Different roles of the extracellular loops in this process were proposed, and X-ray and solution NMR studies were divergent. Here, we report the structure of outer membrane protein G investigated in bilayers of E. coli lipid extracts by magic-angle-spinning NMR. In total, 1847 inter-residue 1H–1H and 13C–13C distance restraints, 256 torsion angles, but no hydrogen bond restraints are used to calculate the structure. The length of β-strands is found to vary beyond the membrane boundary, with strands 6–8 being the longest and the extracellular loops 3 and 4 well ordered. The site of barrel closure at strands 1 and 14 is more disordered than most remaining strands, with the flexibility decreasing toward loops 3 and 4. Loop 4 presents a well-defined helix.

Suggested Citation

  • Joren S. Retel & Andrew J. Nieuwkoop & Matthias Hiller & Victoria A. Higman & Emeline Barbet-Massin & Jan Stanek & Loren B. Andreas & W. Trent Franks & Barth-Jan Rossum & Kutti R. Vinothkumar & Liesel, 2017. "Structure of outer membrane protein G in lipid bilayers," Nature Communications, Nature, vol. 8(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:8:y:2017:i:1:d:10.1038_s41467-017-02228-2
    DOI: 10.1038/s41467-017-02228-2
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